Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetyltransferase | H9N25_13895 | P39274 | Negative | 3409627 - 3409932 | 11967.2 |
| helix-turn-helix transcriptional regulator | H9N25_13900 | O27346 | Negative | 3410059 - 3410424 | 14312.5 |
| sdr family oxidoreductase | H9N25_13905 | Q13268 | Positive | 3410524 - 3411276 | 27232.8 |
| hypothetical protein | H9N25_13910 | Not Available | Positive | 3411494 - 3411784 | 10703.3 |
| ricin domain-containing protein | H9N25_13915 | Not Available | Positive | 3412681 - 3413757 | 38263.3 |
| hypothetical protein | H9N25_13920 | Not Available | Positive | 3414248 - 3414427 | 6565.27 |
| sigma-54-dependent fis family transcriptional regulator | H9N25_13925 | P19323 | Negative | 3414542 - 3416017 | 54841.2 |
| duf1211 domain-containing protein | H9N25_13930 | K9UJK2 | Negative | 3416574 - 3417200 | 23626.1 |
| dienelactone hydrolase family protein | H9N25_13935 | Q12354 | Negative | 3417208 - 3417822 | 22276.6 |
| n-acetyltransferase | H9N25_13940 | P39274 | Negative | 3417827 - 3418132 | 11858.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

