Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1343 domain-containing protein | H9N25_13845 | P40407 | Positive | 3398239 - 3399507 | 46899.0 |
| hypothetical protein | H9N25_13850 | Not Available | Positive | 3399653 - 3399859 | 7681.04 |
| pas domain-containing sensor histidine kinase | H9N25_13855 | Q45614 | Negative | 3399887 - 3401746 | 69893.2 |
| dna topoisomerase ib | H9N25_13860 | Q7T6X9 | Negative | 3401778 - 3402821 | 39642.9 |
| methionyl-trna formyltransferase | H9N25_13865 | Q5L975 | Positive | 3402914 - 3403822 | 33339.5 |
| aminotransferase class iv | H9N25_13870 | P28305 | Negative | 3404293 - 3405132 | 31679.5 |
| rlua family pseudouridine synthase | H9N25_13875 | O50310 | Negative | 3405136 - 3406164 | 39088.8 |
| hypothetical protein | H9N25_13880 | Not Available | Positive | 3406267 - 3407295 | 36599.1 |
| pyridoxal-phosphate dependent enzyme | H9N25_13885 | O57809 | Positive | 3407360 - 3408229 | 32097.8 |
| sgnh/gdsl hydrolase family protein | H9N25_13890 | Not Available | Positive | 3408475 - 3409332 | 32332.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

