Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldo/keto reductase | H9N25_13795 | P77735 | Positive | 3390820 - 3391767 | 35522.0 |
| ai-2e family transporter | H9N25_13800 | O34472 | Positive | 3391846 - 3392955 | 41379.6 |
| hypothetical protein | H9N25_13805 | Not Available | Positive | 3392957 - 3393253 | 10787.6 |
| hypothetical protein | H9N25_13810 | Not Available | Positive | 3393271 - 3393720 | 16886.5 |
| nucleoside triphosphate pyrophosphohydrolase | H9N25_13815 | P44723 | Positive | 3393741 - 3394547 | 30730.3 |
| hypothetical protein | H9N25_13820 | B4EXS5 | Negative | 3394629 - 3395003 | 14438.0 |
| trna pseudouridine synthase a | H9N25_13825 | B2RIV6 | Positive | 3395087 - 3395887 | 30998.5 |
| hypothetical protein | H9N25_13830 | Not Available | Positive | 3395924 - 3396370 | 16295.6 |
| hypothetical protein | H9N25_13835 | Not Available | Positive | 3396384 - 3396785 | 14501.6 |
| doxx family membrane protein | H9N25_13840 | Q8K9N8 | Negative | 3396841 - 3398060 | 45832.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

