Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_13645 | Not Available | Positive | 3352635 - 3353663 | 39018.7 |
| o-antigen ligase family protein | H9N25_13650 | Not Available | Positive | 3353815 - 3355044 | 47414.6 |
| hypothetical protein | H9N25_13655 | Not Available | Positive | 3355059 - 3356543 | 54354.8 |
| hypothetical protein | H9N25_13660 | Not Available | Positive | 3356550 - 3356924 | 14719.8 |
| hypothetical protein | H9N25_13665 | Not Available | Positive | 3357653 - 3357949 | 11389.6 |
| tail fiber protein | H9N25_13670 | Q03314 | Positive | 3358696 - 3359922 | 45100.5 |
| atp-dependent clp protease proteolytic subunit | H9N25_13675 | Q64NW2 | Negative | 3360070 - 3360759 | 25668.8 |
| hypothetical protein | H9N25_13680 | Not Available | Negative | 3360838 - 3361107 | 10942.2 |
| sigma-70 family rna polymerase sigma factor | H9N25_13685 | Not Available | Negative | 3361088 - 3361648 | 21468.0 |
| hypothetical protein | H9N25_13690 | Not Available | Positive | 3361813 - 3362529 | 28022.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

