Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_13545 | Not Available | Positive | 3331222 - 3332031 | 29085.4 |
| abc-f family atp-binding cassette domain-containing protein | H9N25_13550 | P44808 | Positive | 3332172 - 3334079 | 71873.7 |
| duf5103 domain-containing protein | H9N25_13555 | Not Available | Positive | 3334546 - 3335823 | 49549.1 |
| sumf1/egtb/pvdo family nonheme iron enzyme | H9N25_13560 | Q822R1 | Positive | 3335994 - 3336959 | 36648.3 |
| gfo/idh/moca family oxidoreductase | H9N25_13565 | O68965 | Positive | 3336996 - 3338315 | 49061.2 |
| fad:protein fmn transferase | H9N25_13570 | P44550 | Positive | 3338326 - 3339324 | 36790.8 |
| tim barrel protein | H9N25_13575 | P30147 | Positive | 3339340 - 3340266 | 34617.4 |
| giy-yig nuclease family protein | H9N25_13580 | Not Available | Negative | 3340623 - 3340916 | 11586.0 |
| alpha-amylase | H9N25_13585 | P26613 | Negative | 3341286 - 3342773 | 56926.5 |
| acyl-coa thioesterase | H9N25_13590 | Q9PJK7 | Positive | 3343795 - 3344316 | 19347.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

