Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2'-5' rna ligase family protein | H9N25_13495 | Not Available | Positive | 3321397 - 3321966 | 22268.9 |
| bama/tama family outer membrane protein | H9N25_13500 | Q9S341 | Negative | 3321967 - 3324387 | 92035.1 |
| rna methyltransferase | H9N25_13505 | P94538 | Positive | 3324378 - 3325124 | 27626.7 |
| Trna-cys | Not Available | Not Available | Positive | 3325184 - 3325257 | Not Available |
| spore protein | H9N25_13515 | Not Available | Positive | 3325292 - 3325462 | 6317.65 |
| dna alkylation repair protein | H9N25_13520 | P33381 | Positive | 3325577 - 3326242 | 25511.9 |
| quinone-dependent dihydroorotate dehydrogenase | H9N25_13525 | A0M4D0 | Negative | 3326479 - 3327507 | 38317.5 |
| nad(p)h-binding protein | H9N25_13530 | P71037 | Negative | 3327692 - 3328342 | 23167.5 |
| rrf2 family transcriptional regulator | H9N25_13535 | P71036 | Negative | 3328416 - 3328826 | 14803.7 |
| asma family protein | H9N25_13540 | Not Available | Positive | 3328952 - 3331288 | 87472.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

