Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase 43 family protein | H9N25_01305 | T2KN85 | Positive | 330949 - 332505 | 57913.6 |
| doxx family membrane protein | H9N25_01310 | P82450 | Positive | 332665 - 334630 | 69081.8 |
| tonb-dependent receptor | H9N25_01315 | T2KPJ3 | Positive | 335310 - 338414 | 112663.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_01320 | T2KN63 | Positive | 338427 - 340361 | 70064.5 |
| glycosyl hydrolase 115 family protein | H9N25_01325 | Not Available | Positive | 340641 - 343331 | 100994.0 |
| hypothetical protein | H9N25_01330 | Not Available | Positive | 343325 - 343558 | 8465.34 |
| doxx family membrane protein | H9N25_01335 | D5EY13 | Negative | 343879 - 344993 | 40782.8 |
| duf2807 domain-containing protein | H9N25_01340 | Not Available | Negative | 345262 - 345852 | 21181.4 |
| rok family protein | H9N25_01345 | Q9X1I0 | Positive | 346301 - 347191 | 32136.7 |
| doxx family membrane protein | H9N25_01350 | T2KLZ3 | Positive | 347323 - 348530 | 44980.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

