Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-n-arabinofuranosidase | H9N25_13395 | Q59219 | Positive | 3286512 - 3288050 | 57175.2 |
| glycoside hydrolase family 43 protein | H9N25_13400 | A0A3R0A696 | Positive | 3288201 - 3289136 | 35512.3 |
| glycoside hydrolase family 127 protein | H9N25_13405 | Not Available | Negative | 3289205 - 3291550 | 87520.8 |
| doxx family membrane protein | H9N25_13410 | P42304 | Negative | 3291561 - 3292843 | 46717.6 |
| sdr family nad(p)-dependent oxidoreductase | H9N25_13415 | A0A1B3PEI6 | Positive | 3293686 - 3300717 | 256371.0 |
| 4'-phosphopantetheinyl transferase superfamily protein | H9N25_13420 | A0A1B3PEI6 | Positive | 3300741 - 3304976 | 156357.0 |
| acyl carrier protein | H9N25_13425 | Q9WZD0 | Positive | 3304964 - 3305260 | 11256.4 |
| alpha/beta hydrolase | H9N25_13430 | Q59695 | Positive | 3305248 - 3306012 | 28718.8 |
| doxx family membrane protein | H9N25_13435 | Not Available | Positive | 3306025 - 3307223 | 43674.4 |
| glycosyl transferase | H9N25_13440 | Q8KHE4 | Positive | 3307234 - 3308436 | 44462.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

