Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-rhamnose mutarotase | H9N25_13345 | Q8A044 | Negative | 3268433 - 3268741 | 11867.1 |
| glycoside hydrolase family 31 protein | H9N25_13350 | Q9F234 | Negative | 3268900 - 3271353 | 92558.6 |
| glycosyl hydrolase 115 family protein | H9N25_13355 | Not Available | Negative | 3271356 - 3273857 | 93653.5 |
| glycoside hydrolase family 88 protein | H9N25_13360 | T2KPL9 | Negative | 3273863 - 3274990 | 42988.8 |
| beta-glucuronidase | H9N25_13365 | Q56307 | Negative | 3275007 - 3277910 | 109224.0 |
| rhamnogalacturonan acetylesterase | H9N25_13370 | Q5BAA2 | Negative | 3278006 - 3278800 | 29050.0 |
| rhamnogalacturonan acetylesterase | H9N25_13375 | Q5BAA2 | Negative | 3278925 - 3279689 | 28463.2 |
| rhamnogalacturonan lyase | H9N25_13380 | O31526 | Negative | 3279715 - 3281565 | 68001.5 |
| hypothetical protein | H9N25_13385 | Q8CMP4 | Negative | 3281625 - 3284027 | 89144.5 |
| carbohydrate binding domain-containing protein | H9N25_13390 | P82593 | Positive | 3284492 - 3286495 | 75065.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

