Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | H9N25_13295 | Not Available | Negative | 3252933 - 3254078 | 42779.0 |
| rna polymerase sigma-70 factor | H9N25_13300 | Q45585 | Negative | 3254270 - 3254860 | 22798.5 |
| lrp/asnc family transcriptional regulator | H9N25_13305 | Q9I1M3 | Negative | 3254988 - 3255455 | 17948.0 |
| plp-dependent cysteine synthase family protein | H9N25_13310 | Q5HRP1 | Positive | 3255652 - 3256698 | 37766.8 |
| sugar transporter | H9N25_13315 | Not Available | Positive | 3256722 - 3257171 | 16591.3 |
| thioredoxin family protein | H9N25_13320 | Q15ZS2 | Positive | 3257188 - 3258837 | 59884.4 |
| glycoside hydrolase family 2 protein | H9N25_13325 | T2KN75 | Positive | 3259443 - 3262406 | 109795.0 |
| doxx family membrane protein | H9N25_13330 | O30360 | Positive | 3262481 - 3264150 | 60193.6 |
| right-handed parallel beta-helix repeat-containing protein | H9N25_13335 | A7PZL3 | Negative | 3264337 - 3265590 | 46249.4 |
| glycoside hydrolase | H9N25_13340 | T2KNA8 | Negative | 3265657 - 3268428 | 103652.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

