Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyridoxal phosphate-dependent aminotransferase family protein | H9N25_13245 | A7BFV6 | Negative | 3236138 - 3237343 | 43820.5 |
| arac family transcriptional regulator | H9N25_13250 | B4TPR0 | Positive | 3238363 - 3238779 | 16084.6 |
| phytase | H9N25_13255 | O66037 | Negative | 3238949 - 3240028 | 39338.8 |
| right-handed parallel beta-helix repeat-containing protein | H9N25_13260 | Not Available | Negative | 3240030 - 3241289 | 45341.8 |
| outer membrane beta-barrel protein | H9N25_13265 | P17315 | Negative | 3241312 - 3244089 | 103898.0 |
| tetratricopeptide repeat protein | H9N25_13270 | Not Available | Negative | 3244351 - 3245955 | 61530.4 |
| dihydrofolate reductase | H9N25_13275 | P37508 | Positive | 3246181 - 3246732 | 20612.6 |
| ydei/ompd-associated family protein | H9N25_13280 | Not Available | Positive | 3246828 - 3247406 | 22052.2 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_13285 | T2KNB8 | Negative | 3247640 - 3249292 | 61828.2 |
| tonb-dependent receptor | H9N25_13290 | T2KPJ3 | Negative | 3249306 - 3252710 | 124137.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

