Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| universal stress protein | H9N25_13195 | Not Available | Positive | 3225000 - 3225821 | 30419.8 |
| inositol phosphorylceramide synthase | H9N25_13200 | Q8A7K2 | Negative | 3226214 - 3227155 | 36074.5 |
| sterol desaturase family protein | H9N25_13205 | Q4R4P4 | Negative | 3227157 - 3227777 | 24735.1 |
| duf4833 domain-containing protein | H9N25_13210 | Q8A7K1 | Negative | 3228011 - 3229300 | 47722.8 |
| doxx family membrane protein | H9N25_13215 | T2KPJ3 | Negative | 3229311 - 3231855 | 95361.9 |
| gtra family protein | H9N25_13220 | Not Available | Negative | 3231852 - 3232232 | 14040.3 |
| phosphatidylglycerophosphatase a | H9N25_13225 | Q8A7J9 | Negative | 3232235 - 3232693 | 17159.7 |
| inositol-3-phosphate synthase | H9N25_13230 | Q8A7J8 | Negative | 3232690 - 3234015 | 49287.6 |
| nad(p)-dependent oxidoreductase | H9N25_13235 | Q56623 | Negative | 3234034 - 3235023 | 36755.6 |
| hypothetical protein | H9N25_13240 | Q46840 | Negative | 3235020 - 3236141 | 42613.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

