Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | H9N25_13145 | Q04778 | Negative | 3211906 - 3212793 | 33851.3 |
| methyltransferase domain-containing protein | H9N25_13150 | U2ZU49 | Positive | 3212884 - 3213606 | 27025.1 |
| pdz domain-containing protein | H9N25_13155 | P42784 | Positive | 3213766 - 3215175 | 51492.6 |
| sigma-70 family rna polymerase sigma factor | H9N25_13160 | Q45585 | Positive | 3215248 - 3215670 | 16536.3 |
| hypothetical protein | H9N25_13165 | Not Available | Positive | 3215670 - 3215837 | 6484.95 |
| fecr family protein | H9N25_13170 | Not Available | Positive | 3216033 - 3217055 | 38542.4 |
| tonb-dependent receptor | H9N25_13175 | T2KMI3 | Positive | 3217226 - 3220471 | 121943.0 |
| hypothetical protein | H9N25_13180 | Not Available | Positive | 3220858 - 3222159 | 44697.4 |
| hypothetical protein | H9N25_13185 | Not Available | Positive | 3222252 - 3223352 | 40142.5 |
| doxx family membrane protein | H9N25_13190 | P0AFJ9 | Positive | 3223551 - 3224968 | 50022.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

