Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_13095 | T2KMF4 | Positive | 3195717 - 3198032 | 86461.0 |
| response regulator | H9N25_13100 | T2KMF4 | Positive | 3198044 - 3199759 | 65312.6 |
| duf2264 domain-containing protein | H9N25_13105 | Not Available | Negative | 3199830 - 3201089 | 47212.8 |
| glycoside hydrolase family 88 protein | H9N25_13110 | T2KLZ3 | Negative | 3201099 - 3202211 | 42267.2 |
| tolc family protein | H9N25_13115 | P13509 | Negative | 3202765 - 3204039 | 47199.4 |
| doxx family membrane protein | H9N25_13120 | Q48815 | Negative | 3204042 - 3207138 | 111743.0 |
| efflux rnd transporter periplasmic adaptor subunit | H9N25_13125 | P77239 | Negative | 3207157 - 3208287 | 41224.3 |
| mgtc/sapb family protein | H9N25_13130 | Q57208 | Negative | 3208319 - 3209020 | 25345.3 |
| hamp domain-containing protein | H9N25_13135 | Q2YY04 | Negative | 3209630 - 3210997 | 51326.4 |
| response regulator transcription factor | H9N25_13140 | P0AD00 | Negative | 3211019 - 3211702 | 26192.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

