Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_13045 | Not Available | Positive | 3180155 - 3180544 | 14918.1 |
| alpha/beta hydrolase | H9N25_13050 | D4Q9N1 | Positive | 3180546 - 3181589 | 38508.3 |
| beta-lactamase family protein | H9N25_13055 | P77619 | Positive | 3181594 - 3182679 | 39803.9 |
| duf2264 domain-containing protein | H9N25_13060 | Not Available | Negative | 3182959 - 3184212 | 46681.6 |
| glycoside hydrolase family 88 protein | H9N25_13065 | T2KPL9 | Negative | 3184229 - 3185587 | 51339.2 |
| dnrlre domain-containing protein | H9N25_13070 | P96156 | Negative | 3185996 - 3190342 | 152984.0 |
| hypothetical protein | H9N25_13075 | Not Available | Negative | 3190626 - 3190880 | 9662.33 |
| discoidin domain-containing protein | H9N25_13080 | I1S2N3 | Negative | 3190907 - 3191791 | 31850.2 |
| type ix secretion system outer membrane channel protein porv | H9N25_13085 | Not Available | Negative | 3191963 - 3193126 | 41238.4 |
| hypothetical protein | H9N25_13090 | Not Available | Negative | 3194062 - 3195456 | 52776.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

