Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_12995 | Not Available | Negative | 3170779 - 3171048 | 9939.92 |
| nitrilase family protein | H9N25_13000 | Q9UYV8 | Negative | 3172865 - 3173809 | 34822.1 |
| arac family transcriptional regulator | H9N25_13005 | Not Available | Negative | 3173910 - 3174689 | 29989.0 |
| nuclear transport factor 2 family protein | H9N25_13010 | Not Available | Negative | 3174865 - 3175296 | 16198.6 |
| nuclear transport factor 2 family protein | H9N25_13015 | P9WM92 | Negative | 3175362 - 3175760 | 14779.5 |
| arac family transcriptional regulator ligand-binding domain-containing protein | H9N25_13020 | P72171 | Positive | 3175908 - 3176921 | 38471.5 |
| histidine kinase | H9N25_13025 | P0AD15 | Positive | 3177127 - 3178149 | 39258.8 |
| response regulator transcription factor | H9N25_13030 | Q81JL3 | Positive | 3178146 - 3178922 | 30071.1 |
| sterol desaturase family protein | H9N25_13035 | Q5M8F9 | Positive | 3179033 - 3179866 | 32061.9 |
| hypothetical protein | H9N25_13040 | Not Available | Positive | 3179893 - 3180111 | 7993.48 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

