Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_12945 | Not Available | Negative | 3157598 - 3158743 | 44546.8 |
| histidine kinase | H9N25_12950 | P0AA94 | Positive | 3159286 - 3160104 | 31727.5 |
| response regulator transcription factor | H9N25_12955 | Q8EDD7 | Positive | 3160101 - 3160838 | 27512.1 |
| lantibiotic dehydratase | H9N25_12960 | P39774 | Negative | 3160835 - 3162916 | 79252.0 |
| lantibiotic dehydratase | H9N25_12965 | P20103 | Negative | 3162808 - 3163848 | 39455.6 |
| hypothetical protein | H9N25_12970 | Not Available | Positive | 3163938 - 3164363 | 15864.8 |
| hypothetical protein | H9N25_12975 | Not Available | Positive | 3164482 - 3164805 | 11472.5 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_12980 | Not Available | Negative | 3164845 - 3166197 | 50251.6 |
| susc/raga family tonb-linked outer membrane protein | H9N25_12985 | T2KPJ3 | Negative | 3166209 - 3169406 | 117052.0 |
| tlpa family protein disulfide reductase | H9N25_12990 | O31820 | Negative | 3169403 - 3170728 | 48883.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

