Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endo-1,4-beta-xylanase | H9N25_01255 | Q12603 | Negative | 310407 - 311495 | 41784.0 |
| doxx family membrane protein | H9N25_01260 | P23556 | Positive | 311792 - 312890 | 39940.2 |
| response regulator | H9N25_01265 | T2KMF4 | Positive | 313098 - 317273 | 155864.0 |
| hypothetical protein | H9N25_01270 | Not Available | Positive | 317831 - 317977 | 5444.4 |
| tonb-dependent receptor | H9N25_01275 | T2KPJ3 | Positive | 318300 - 321392 | 114827.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_01280 | T2KN63 | Positive | 321403 - 323286 | 71504.9 |
| susc/raga family tonb-linked outer membrane protein | H9N25_01285 | T2KPJ3 | Positive | 323314 - 326190 | 106887.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_01290 | T2KN63 | Positive | 326213 - 327973 | 65269.0 |
| duf1735 domain-containing protein | H9N25_01295 | Not Available | Positive | 328015 - 328983 | 35722.5 |
| endo-1,4-beta-xylanase | H9N25_01300 | P14768 | Positive | 328997 - 330679 | 61305.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

