Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | H9N25_12895 | T2KPM5 | Negative | 3131542 - 3133113 | 59315.9 |
| susc/raga family tonb-linked outer membrane protein | H9N25_12900 | T2KM18 | Negative | 3133122 - 3136067 | 109767.0 |
| ricin domain-containing protein | H9N25_12905 | P22534 | Negative | 3136808 - 3143599 | 242521.0 |
| alginate lyase family protein | H9N25_12910 | Not Available | Negative | 3143698 - 3144192 | 18382.2 |
| vcbs repeat-containing protein | H9N25_12915 | G4NYJ6 | Negative | 3145621 - 3152535 | 257635.0 |
| hypothetical protein | H9N25_12920 | Not Available | Negative | 3152547 - 3152822 | 9639.55 |
| hypothetical protein | H9N25_12925 | Not Available | Positive | 3153604 - 3154062 | 17135.1 |
| carboxypeptidase-like regulatory domain-containing protein | H9N25_12930 | Not Available | Positive | 3154059 - 3155138 | 41446.8 |
| hypothetical protein | H9N25_12935 | Not Available | Positive | 3155135 - 3156130 | 37469.3 |
| helix-turn-helix transcriptional regulator | H9N25_12940 | Not Available | Negative | 3157044 - 3157310 | 10325.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

