Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 95 protein | H9N25_12845 | Q8L7W8 | Negative | 3114367 - 3116814 | 91270.1 |
| glycoside hydrolase 43 family protein | H9N25_12850 | T2KN85 | Negative | 3116912 - 3118522 | 61429.6 |
| duf5013 domain-containing protein | H9N25_12855 | Not Available | Negative | 3118625 - 3120202 | 56081.4 |
| duf4983 domain-containing protein | H9N25_12860 | Not Available | Negative | 3120212 - 3122083 | 69076.2 |
| duf5008 domain-containing protein | H9N25_12865 | Not Available | Negative | 3122097 - 3123746 | 59229.5 |
| hypothetical protein | H9N25_12870 | Not Available | Negative | 3123755 - 3124459 | 26396.6 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_12875 | T2KPM5 | Negative | 3124477 - 3126045 | 59213.2 |
| susc/raga family tonb-linked outer membrane protein | H9N25_12880 | T2KPJ3 | Negative | 3126093 - 3129182 | 112375.0 |
| duf5007 domain-containing protein | H9N25_12885 | Not Available | Negative | 3129232 - 3130296 | 39912.7 |
| fasciclin domain-containing protein | H9N25_12890 | Not Available | Negative | 3130329 - 3131540 | 45020.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

