Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator | H9N25_12795 | P37478 | Positive | 3100337 - 3100693 | 13560.4 |
| type ix secretion system outer membrane channel protein porv | H9N25_12800 | Not Available | Negative | 3100950 - 3102122 | 42024.3 |
| beta-galactosidase | H9N25_12805 | Q9SCV5 | Negative | 3102209 - 3104200 | 75158.0 |
| cellulase family glycosylhydrolase | H9N25_12810 | O08342 | Positive | 3105042 - 3106739 | 61876.2 |
| alginate lyase family protein | H9N25_12815 | Not Available | Negative | 3106838 - 3107992 | 41990.2 |
| doxx family membrane protein | H9N25_12820 | P17164 | Negative | 3108666 - 3110329 | 62081.3 |
| Trna-arg | Not Available | Not Available | Positive | 3110523 - 3110594 | Not Available |
| tlpa family protein disulfide reductase | H9N25_12830 | Q73B22 | Positive | 3110956 - 3111726 | 29357.7 |
| doxx family membrane protein | H9N25_12835 | Not Available | Negative | 3111756 - 3112151 | 14701.0 |
| hypothetical protein | H9N25_12840 | Not Available | Positive | 3112696 - 3114093 | 53270.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

