Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zip family metal transporter | H9N25_12700 | P59889 | Positive | 3081010 - 3081726 | 26279.0 |
| hypothetical protein | H9N25_12705 | Q5VUE5 | Negative | 3081935 - 3082078 | 5685.85 |
| exonuclease | H9N25_12710 | B1ZZL9 | Negative | 3082130 - 3083071 | 35962.2 |
| dephospho-coa kinase | H9N25_12715 | Q2RYU8 | Negative | 3083115 - 3083732 | 22496.2 |
| ybbr-like domain-containing protein | H9N25_12720 | Not Available | Negative | 3083732 - 3084589 | 32683.6 |
| preprotein translocase subunit yajc | H9N25_12725 | O67295 | Negative | 3084799 - 3085119 | 11521.5 |
| duf1573 domain-containing protein | H9N25_12730 | Not Available | Negative | 3085187 - 3085645 | 15975.4 |
| transcription antitermination factor nusb | H9N25_12735 | Q2S6K8 | Negative | 3085648 - 3086598 | 36914.7 |
| glu/leu/phe/val dehydrogenase | H9N25_12740 | P0A393 | Negative | 3086649 - 3087737 | 39321.4 |
| abc transporter atp-binding protein | H9N25_12745 | O07550 | Positive | 3088300 - 3090090 | 67820.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

