Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_12650 | Not Available | Positive | 3068832 - 3069296 | 17222.3 |
| m20/m25/m40 family metallo-hydrolase | H9N25_12655 | Q9WVJ3 | Positive | 3069589 - 3071136 | 56699.5 |
| cytochrome d ubiquinol oxidase subunit ii | H9N25_12660 | P94365 | Negative | 3071337 - 3072341 | 37491.0 |
| cytochrome ubiquinol oxidase subunit i | H9N25_12665 | C0SP90 | Negative | 3072348 - 3073670 | 48672.4 |
| mbl fold metallo-hydrolase | H9N25_12670 | P04190 | Negative | 3074149 - 3075048 | 33300.4 |
| hypothetical protein | H9N25_12675 | Not Available | Negative | 3075130 - 3075333 | 7356.52 |
| cysteine desulfurase | H9N25_12680 | B8DZS1 | Negative | 3076686 - 3077834 | 41940.1 |
| phosphoglucosamine mutase | H9N25_12685 | Q68BJ6 | Negative | 3077965 - 3079350 | 50097.0 |
| class i sam-dependent methyltransferase | H9N25_12690 | P54458 | Positive | 3079715 - 3080446 | 28724.4 |
| phosphatase pap2 family protein | H9N25_12695 | Q8A6M3 | Positive | 3080443 - 3081006 | 21450.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

