Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thymidylate synthase | H9N25_12600 | Q11VK5 | Positive | 3056414 - 3057208 | 30151.1 |
| dihydrofolate reductase | H9N25_12605 | P11045 | Positive | 3057465 - 3057983 | 19644.5 |
| protein translocase subunit secdf | H9N25_12610 | D0MIN4 | Positive | 3058425 - 3061406 | 107236.0 |
| nad(p)/fad-dependent oxidoreductase | H9N25_12615 | P95160 | Positive | 3061748 - 3063082 | 49456.1 |
| hydroxymethylglutaryl-coa lyase | H9N25_12620 | D4A5C3 | Positive | 3063215 - 3064075 | 31408.6 |
| energy transducer tonb | H9N25_12625 | Q51368 | Negative | 3064194 - 3064895 | 26851.5 |
| doxx family membrane protein | H9N25_12630 | Q6GI30 | Negative | 3065011 - 3065432 | 15899.5 |
| low affinity iron permease family protein | H9N25_12635 | Not Available | Negative | 3065407 - 3065913 | 18902.7 |
| class ii fructose-bisphosphate aldolase | H9N25_12640 | P44429 | Negative | 3066054 - 3067133 | 39786.3 |
| acetyl-coa carboxylase carboxyltransferase subunit beta | H9N25_12645 | C6XT67 | Positive | 3067444 - 3068289 | 31225.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

