Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_12550 | Not Available | Negative | 3047997 - 3048290 | 10554.0 |
| pirin family protein | H9N25_12555 | P46852 | Negative | 3048445 - 3049167 | 26600.2 |
| dna alkylation repair protein | H9N25_12560 | Not Available | Negative | 3049251 - 3049943 | 26320.6 |
| family 20 glycosylhydrolase | H9N25_12565 | P49008 | Negative | 3049967 - 3051394 | 54378.8 |
| family 20 glycosylhydrolase | H9N25_12570 | P96155 | Negative | 3051409 - 3052215 | 30721.0 |
| hypothetical protein | H9N25_12575 | Not Available | Negative | 3052367 - 3053128 | 29355.2 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | H9N25_12580 | P55218 | Negative | 3053220 - 3054386 | 42982.3 |
| osmc family protein | H9N25_12585 | P0ADX3 | Negative | 3054538 - 3054954 | 15287.5 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | H9N25_12590 | A6L5X6 | Negative | 3055129 - 3055932 | 29681.8 |
| hypothetical protein | H9N25_12595 | Not Available | Positive | 3056102 - 3056359 | 9219.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

