Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| blai/meci/copy family transcriptional regulator | H9N25_12500 | P06555 | Positive | 3035777 - 3036148 | 14383.6 |
| hypothetical protein | H9N25_12505 | Not Available | Positive | 3036313 - 3037482 | 43485.9 |
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | H9N25_12510 | Q11VU7 | Negative | 3037483 - 3038118 | 24009.0 |
| doxx family membrane protein | H9N25_12515 | Q8GLC5 | Negative | 3038145 - 3039244 | 41566.7 |
| trna guanosine(34) transglycosylase tgt | H9N25_12520 | Q8RAM9 | Positive | 3039503 - 3040633 | 42497.5 |
| lptf/lptg family permease | H9N25_12525 | Not Available | Positive | 3040635 - 3041738 | 41887.4 |
| dmt family transporter | H9N25_12530 | O29740 | Positive | 3041741 - 3042619 | 32812.5 |
| hypothetical protein | H9N25_12535 | Not Available | Negative | 3043577 - 3043732 | 6032.66 |
| hypothetical protein | H9N25_12540 | Not Available | Positive | 3044681 - 3047485 | 107872.0 |
| duf1049 domain-containing protein | H9N25_12545 | Not Available | Positive | 3047490 - 3047768 | 10293.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

