Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| family 43 glycosylhydrolase | H9N25_01205 | Q45071 | Negative | 293891 - 295264 | 51137.4 |
| sialate o-acetylesterase | H9N25_01210 | D5EXZ4 | Negative | 295274 - 296131 | 31227.9 |
| glycoside hydrolase family 43 protein | H9N25_01215 | P49943 | Positive | 296558 - 297658 | 41060.4 |
| doxx family membrane protein | H9N25_01220 | P45982 | Negative | 297848 - 299511 | 62171.3 |
| doxx family membrane protein | H9N25_01225 | Q8A7U2 | Negative | 299586 - 300769 | 44005.7 |
| esterase family protein | H9N25_01230 | P10478 | Positive | 301245 - 302120 | 32541.5 |
| glycoside hydrolase family 95 protein | H9N25_01235 | Q8L7W8 | Positive | 302146 - 304608 | 91322.9 |
| glycoside hydrolase family 97 catalytic domain-containing protein | H9N25_01240 | D7CFN7 | Positive | 304651 - 306582 | 71977.4 |
| alpha-glucuronidase | H9N25_01245 | B3PC73 | Negative | 306740 - 308794 | 77694.3 |
| family 43 glycosylhydrolase | H9N25_01250 | Q45071 | Negative | 308896 - 310275 | 50945.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

