Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_12400 | Not Available | Positive | 3010508 - 3010720 | 8270.89 |
| hypothetical protein | H9N25_12405 | Not Available | Positive | 3010888 - 3011742 | 31275.0 |
| uma2 family endonuclease | H9N25_12410 | P72873 | Positive | 3011783 - 3012412 | 23981.0 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | H9N25_12415 | P0A9L1 | Negative | 3012495 - 3013001 | 18043.9 |
| thioredoxin domain-containing protein | H9N25_12420 | P37512 | Negative | 3013012 - 3015021 | 76274.0 |
| dipeptide epimerase | H9N25_12425 | Q11T61 | Positive | 3015153 - 3016250 | 40781.0 |
| glycoside hydrolase family 25 protein | H9N25_12430 | Q8FFY2 | Negative | 3016446 - 3017342 | 34733.3 |
| mfs transporter | H9N25_12435 | O34546 | Positive | 3017483 - 3018730 | 45975.5 |
| family 43 glycosylhydrolase | H9N25_12440 | P49943 | Negative | 3018751 - 3019731 | 36908.9 |
| hypothetical protein | H9N25_12445 | Not Available | Positive | 3019793 - 3020026 | 8589.38 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

