Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide deacetylase family protein | H9N25_12350 | P94361 | Positive | 3001489 - 3002367 | 33188.9 |
| polysaccharide deacetylase family protein | H9N25_12355 | P94361 | Positive | 3002386 - 3003246 | 32752.1 |
| duf3298 domain-containing protein | H9N25_12360 | Not Available | Positive | 3003285 - 3004454 | 43920.4 |
| 3-oxoacyl-acp synthase | H9N25_12365 | Not Available | Negative | 3004642 - 3005094 | 16924.1 |
| duf1801 domain-containing protein | H9N25_12370 | Not Available | Negative | 3005141 - 3005485 | 13744.9 |
| nitroreductase | H9N25_12375 | O31571 | Negative | 3005629 - 3006204 | 21676.2 |
| hypothetical protein | H9N25_12380 | Not Available | Negative | 3006326 - 3006886 | 21586.3 |
| doxx family membrane protein | H9N25_12385 | O31716 | Positive | 3007325 - 3008946 | 60060.9 |
| duf4397 domain-containing protein | H9N25_12390 | Not Available | Positive | 3009113 - 3009808 | 24911.1 |
| rna polymerase sigma factor | H9N25_12395 | O07582 | Positive | 3009931 - 3010515 | 22395.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

