Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_12300 | Not Available | Positive | 2988239 - 2988802 | 21914.0 |
| outer membrane beta-barrel protein | H9N25_12305 | Not Available | Positive | 2988965 - 2989609 | 24121.3 |
| mfs transporter | H9N25_12310 | P52067 | Negative | 2989861 - 2991063 | 43361.2 |
| nad(p)h-dependent oxidoreductase | H9N25_12315 | Q9I4D4 | Positive | 2991167 - 2991724 | 20309.7 |
| porin family protein | H9N25_12320 | Not Available | Positive | 2992042 - 2992644 | 21327.5 |
| doxx family membrane protein | H9N25_12325 | P80561 | Negative | 2992728 - 2994379 | 60253.8 |
| s8 family peptidase | H9N25_12330 | Q9GTN7 | Negative | 2994508 - 2996679 | 79302.2 |
| hypothetical protein | H9N25_12335 | Not Available | Negative | 2996700 - 2997332 | 23421.9 |
| protease | H9N25_12340 | Not Available | Positive | 2997455 - 2998291 | 29635.8 |
| s9 family peptidase | H9N25_12345 | Q6F3I7 | Negative | 2998805 - 3001312 | 95474.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

