Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nudix domain-containing protein | H9N25_12250 | Q75UV1 | Negative | 2975476 - 2976087 | 23761.1 |
| hypothetical protein | H9N25_12255 | Not Available | Positive | 2976584 - 2977459 | 33548.5 |
| nad(p)-dependent alcohol dehydrogenase | H9N25_12260 | O82515 | Negative | 2977533 - 2978576 | 37847.5 |
| gdp-mannose pyrophosphatase nudk | H9N25_12265 | A1ADX2 | Negative | 2978675 - 2979253 | 21930.4 |
| deor/glpr transcriptional regulator | H9N25_12270 | D4GYE7 | Positive | 2979310 - 2980062 | 27324.1 |
| orotate phosphoribosyltransferase | H9N25_12275 | A6KYP1 | Positive | 2980442 - 2981107 | 24105.9 |
| srpbcc family protein | H9N25_12280 | Not Available | Positive | 2981144 - 2981542 | 14882.8 |
| family 78 glycoside hydrolase catalytic domain | H9N25_12285 | P9WF03 | Positive | 2981686 - 2984361 | 100837.0 |
| atp-dependent chaperone clpb | H9N25_12290 | Q89YY3 | Positive | 2984823 - 2987423 | 97670.7 |
| outer membrane beta-barrel protein | H9N25_12295 | Not Available | Positive | 2987574 - 2988227 | 24879.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

