Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| scramblase | H9N25_12200 | A0PG75 | Negative | 2965784 - 2966386 | 22762.5 |
| rna-binding protein | H9N25_12205 | O06747 | Positive | 2966721 - 2967566 | 31834.8 |
| mcp four helix bundle domain-containing protein | H9N25_12210 | Not Available | Negative | 2967701 - 2968372 | 25184.4 |
| doxx family membrane protein | H9N25_12215 | Q9RT63 | Negative | 2968483 - 2969915 | 52844.3 |
| doxx family membrane protein | H9N25_12220 | Not Available | Negative | 2970226 - 2971364 | 42586.6 |
| duf3822 family protein | H9N25_12225 | Not Available | Positive | 2971757 - 2972563 | 30740.3 |
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | H9N25_12230 | O34331 | Positive | 2972554 - 2973087 | 20028.2 |
| pantetheine-phosphate adenylyltransferase | H9N25_12235 | Q72M66 | Positive | 2973518 - 2973979 | 17326.2 |
| sigma-70 family rna polymerase sigma factor | H9N25_12240 | P35165 | Positive | 2974238 - 2974741 | 19756.9 |
| hypothetical protein | H9N25_12245 | Not Available | Positive | 2974731 - 2975336 | 24131.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

