Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zf-hc2 domain-containing protein | H9N25_12100 | Not Available | Negative | 2949394 - 2949660 | 10059.5 |
| sigma-70 family rna polymerase sigma factor | H9N25_12105 | P45215 | Negative | 2949662 - 2950252 | 22848.3 |
| hypothetical protein | H9N25_12110 | Not Available | Positive | 2950444 - 2950674 | 8882.65 |
| doxx family membrane protein | H9N25_12115 | O32147 | Positive | 2950847 - 2951949 | 39973.2 |
| nucleotidyltransferase family protein | H9N25_12120 | Q93NF6 | Positive | 2951966 - 2952556 | 21558.0 |
| gtp 3',8-cyclase moaa | H9N25_12125 | Q39055 | Positive | 2952553 - 2953533 | 36841.0 |
| molybdopterin molybdotransferase moea | H9N25_12130 | P45210 | Positive | 2953541 - 2954719 | 42308.1 |
| sulfite exporter taue/safe family protein | H9N25_12135 | P55478 | Positive | 2954723 - 2955463 | 26517.5 |
| molybdopterin-binding protein | H9N25_12140 | Not Available | Positive | 2955465 - 2955962 | 18638.8 |
| moad/this family protein | H9N25_12145 | Q7A441 | Positive | 2955967 - 2956200 | 8749.68 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

