Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | H9N25_12050 | Not Available | Positive | 2941630 - 2941887 | 9709.89 |
| hypothetical protein | H9N25_12055 | Not Available | Negative | 2942088 - 2942318 | 8735.71 |
| phosphatase pap2 family protein | H9N25_12060 | Q57819 | Positive | 2942572 - 2943255 | 26410.9 |
| glycosyltransferase family 39 protein | H9N25_12065 | Q1MLH5 | Positive | 2943256 - 2944785 | 58295.2 |
| alpha/beta hydrolase | H9N25_12070 | P24484 | Positive | 2944920 - 2945873 | 35443.0 |
| hypothetical protein | H9N25_12075 | Not Available | Negative | 2945933 - 2946130 | 7533.24 |
| gfo/idh/moca family oxidoreductase | H9N25_12080 | T2KNC8 | Positive | 2946410 - 2947381 | 36081.7 |
| hypothetical protein | H9N25_12085 | Not Available | Negative | 2947480 - 2948097 | 24658.9 |
| hypothetical protein | H9N25_12090 | Not Available | Negative | 2948105 - 2948497 | 15096.2 |
| redoxin domain-containing protein | H9N25_12095 | P0C5D4 | Negative | 2948755 - 2949336 | 21769.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

