Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prephenate dehydratase | H9N25_12000 | O67085 | Positive | 2927750 - 2928583 | 31590.9 |
| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type ii | H9N25_12005 | Q9WYH8 | Positive | 2928696 - 2929835 | 41715.4 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | H9N25_12010 | Q5LHG9 | Positive | 2930038 - 2931306 | 45991.5 |
| chorismate synthase | H9N25_12015 | A0M1V5 | Positive | 2931395 - 2932492 | 39036.5 |
| duf1684 domain-containing protein | H9N25_12020 | Not Available | Positive | 2932502 - 2933110 | 23501.8 |
| response regulator transcription factor | H9N25_12025 | Q81JL3 | Positive | 2933226 - 2933981 | 28973.1 |
| tetratricopeptide repeat protein | H9N25_12030 | P37894 | Negative | 2933983 - 2936238 | 84875.7 |
| transketolase | H9N25_12035 | P35488 | Negative | 2936570 - 2938990 | 89477.2 |
| duf1573 domain-containing protein | H9N25_12040 | Not Available | Positive | 2939162 - 2939554 | 13880.9 |
| pyridoxal phosphate-dependent aminotransferase | H9N25_12045 | P53001 | Positive | 2939618 - 2940817 | 44297.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

