Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_11950 | P72366 | Negative | 2917893 - 2918102 | 7796.43 |
| cold shock domain-containing protein | H9N25_11955 | Q9S170 | Negative | 2918213 - 2918410 | 7045.51 |
| cold shock domain-containing protein | H9N25_11960 | P39158 | Negative | 2918415 - 2918603 | 6949.27 |
| pqq-dependent sugar dehydrogenase | H9N25_11965 | P73001 | Positive | 2919419 - 2922127 | 99677.8 |
| had family phosphatase | H9N25_11970 | Q8A947 | Positive | 2922360 - 2922995 | 24304.8 |
| duf962 domain-containing protein | H9N25_11975 | Not Available | Positive | 2923004 - 2923324 | 12404.0 |
| proline dehydrogenase family protein | H9N25_11980 | Q86H28 | Negative | 2923611 - 2924795 | 44830.9 |
| rna-binding s4 domain-containing protein | H9N25_11985 | P0AAS7 | Positive | 2924890 - 2925096 | 7509.22 |
| 3-dehydroquinate synthase | H9N25_11990 | A6LEZ7 | Positive | 2925096 - 2926154 | 39225.9 |
| sterol desaturase family protein | H9N25_11995 | P68434 | Positive | 2926156 - 2927118 | 37761.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

