Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| discoidin domain-containing protein | H9N25_01155 | Q02834 | Positive | 276226 - 277863 | 59995.9 |
| sigma-70 family rna polymerase sigma factor | H9N25_01160 | P44790 | Positive | 278184 - 278789 | 23414.6 |
| alpha-n-acetylglucosaminidase c-terminal domain-containing protein | H9N25_01165 | P54802 | Positive | 279050 - 281197 | 81335.0 |
| beta-galactosidase | H9N25_01170 | P48982 | Positive | 281263 - 283125 | 69589.8 |
| cysteine desulfurase | H9N25_01175 | A7FWJ9 | Positive | 283771 - 284925 | 41635.1 |
| ahpc/tsa family protein | H9N25_01180 | Q73B22 | Positive | 284964 - 286091 | 41137.0 |
| susc/raga family tonb-linked outer membrane protein | H9N25_01185 | T2KPJ3 | Positive | 286497 - 289559 | 114143.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_01190 | Not Available | Positive | 289569 - 291047 | 55486.5 |
| duf4843 domain-containing protein | H9N25_01195 | Not Available | Positive | 291058 - 291849 | 30812.8 |
| hypothetical protein | H9N25_01200 | Not Available | Positive | 291859 - 293352 | 55431.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

