Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | H9N25_11750 | O27346 | Negative | 2861912 - 2862289 | 14442.5 |
| glucose 1-dehydrogenase | H9N25_11755 | O31680 | Positive | 2862399 - 2863151 | 26266.4 |
| nadph-dependent f420 reductase | H9N25_11760 | Q8BWB6 | Positive | 2863168 - 2863797 | 21773.1 |
| glucose 1-dehydrogenase | H9N25_11765 | Q49117 | Positive | 2863822 - 2864580 | 25943.1 |
| gliding motility-associated c-terminal domain-containing protein | H9N25_11770 | P43153 | Positive | 2864787 - 2866814 | 73415.7 |
| type ix secretion system membrane protein porp/sprf | H9N25_11775 | Not Available | Negative | 2866815 - 2867822 | 37516.7 |
| hypothetical protein | H9N25_11780 | Not Available | Negative | 2867861 - 2869117 | 46552.9 |
| hypothetical protein | H9N25_11785 | Not Available | Negative | 2869122 - 2869547 | 15774.0 |
| hypothetical protein | H9N25_11790 | Not Available | Negative | 2869763 - 2870440 | 24512.9 |
| hypothetical protein | H9N25_11795 | Not Available | Negative | 2870446 - 2871711 | 45419.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

