Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | H9N25_11700 | P03022 | Positive | 2849489 - 2850340 | 32360.2 |
| hypothetical protein | H9N25_11705 | Not Available | Positive | 2850440 - 2850679 | 9050.15 |
| Trna-met | Not Available | Not Available | Positive | 2851602 - 2851675 | Not Available |
| hypothetical protein | H9N25_11715 | Not Available | Positive | 2851965 - 2852138 | 5923.89 |
| jab domain-containing protein | H9N25_11720 | A6TQH8 | Negative | 2852323 - 2852481 | 5446.68 |
| doxx family membrane protein | H9N25_11725 | P25197 | Negative | 2852558 - 2855610 | 112458.0 |
| efflux rnd transporter periplasmic adaptor subunit | H9N25_11730 | Q57500 | Negative | 2855621 - 2856667 | 37500.2 |
| tolc family protein | H9N25_11735 | Not Available | Negative | 2856673 - 2858046 | 52046.2 |
| tetr/acrr family transcriptional regulator | H9N25_11740 | Q2YWD0 | Negative | 2858093 - 2858701 | 23384.2 |
| tonb-dependent receptor | H9N25_11745 | A0A0H2ZI93 | Positive | 2859302 - 2861710 | 88336.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

