Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hd domain-containing protein | H9N25_11600 | Not Available | Negative | 2824115 - 2825341 | 47041.8 |
| rok family protein | H9N25_11605 | Q9X1I0 | Negative | 2826041 - 2827006 | 34052.4 |
| sugar phosphate isomerase/epimerase | H9N25_11610 | Not Available | Negative | 2827285 - 2828211 | 35426.3 |
| port family protein | H9N25_11615 | Not Available | Negative | 2828426 - 2828989 | 20269.6 |
| helix-turn-helix domain-containing protein | H9N25_11620 | A0A0H2ZIC3 | Negative | 2829246 - 2830214 | 36927.4 |
| dihydrofolate reductase family protein | H9N25_11625 | P37508 | Positive | 2830350 - 2830904 | 20386.4 |
| voc family protein | H9N25_11630 | Not Available | Positive | 2830934 - 2831323 | 14355.1 |
| srpbcc family protein | H9N25_11635 | Not Available | Negative | 2831489 - 2831938 | 16620.0 |
| protease | H9N25_11640 | Not Available | Positive | 2832225 - 2833058 | 29951.2 |
| tonb-dependent receptor | H9N25_11645 | Q8A1G1 | Positive | 2833502 - 2836489 | 108785.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

