Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| twin-arginine translocase tata/tate family subunit | H9N25_11550 | Q3B2G6 | Negative | 2809560 - 2809700 | 4994.47 |
| hd domain-containing protein | H9N25_11555 | O05502 | Negative | 2810053 - 2810907 | 32115.0 |
| tetr/acrr family transcriptional regulator | H9N25_11560 | Not Available | Positive | 2811133 - 2811786 | 25823.7 |
| aarf/abc1/ubib kinase family protein | H9N25_11565 | Q54IH6 | Positive | 2811794 - 2813098 | 50085.0 |
| response regulator | H9N25_11570 | A7WWQ5 | Negative | 2813366 - 2813722 | 13280.6 |
| duf2807 domain-containing protein | H9N25_11575 | Not Available | Positive | 2813992 - 2814594 | 21690.0 |
| gaf domain-containing protein | H9N25_11580 | Not Available | Negative | 2814742 - 2817135 | 92661.2 |
| metallophosphoesterase | H9N25_11585 | Not Available | Negative | 2817311 - 2820913 | 137199.0 |
| sdia-regulated domain-containing protein | H9N25_11590 | Not Available | Negative | 2821077 - 2821988 | 33425.6 |
| polyphosphate kinase 1 | H9N25_11595 | Q87S51 | Negative | 2822076 - 2824115 | 78456.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

