Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator | H9N25_11500 | P0DUE7 | Negative | 2797926 - 2798660 | 27485.4 |
| histidine kinase | H9N25_11505 | P0AD15 | Negative | 2798638 - 2799660 | 38938.4 |
| duf4288 domain-containing protein | H9N25_11510 | Not Available | Negative | 2799689 - 2800036 | 12802.2 |
| hypothetical protein | H9N25_11515 | Not Available | Negative | 2800060 - 2800824 | 27883.9 |
| chan family lipoprotein | H9N25_11520 | Not Available | Positive | 2800956 - 2801828 | 33031.6 |
| large conductance mechanosensitive channel protein mscl | H9N25_11525 | Q47AR9 | Negative | 2801871 - 2802320 | 15839.8 |
| rna polymerase factor sigma-54 | H9N25_11530 | P26979 | Positive | 2802489 - 2803961 | 56779.4 |
| doxx family membrane protein | H9N25_11535 | Not Available | Negative | 2804395 - 2805323 | 34113.9 |
| pkd domain-containing protein | H9N25_11540 | Q58863 | Negative | 2805406 - 2808909 | 127526.0 |
| hypothetical protein | H9N25_11545 | Not Available | Negative | 2809289 - 2809501 | 7855.55 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

