Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ssra-binding protein smpb | H9N25_11450 | A6L3C0 | Positive | 2788516 - 2788965 | 17482.4 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | H9N25_11455 | Q11TS0 | Negative | 2789029 - 2789685 | 24499.8 |
| primosomal protein n' | H9N25_11460 | P94461 | Negative | 2789777 - 2792257 | 94133.7 |
| duf423 domain-containing protein | H9N25_11465 | Q2YS64 | Negative | 2792257 - 2792643 | 14331.8 |
| hypothetical protein | H9N25_11470 | Not Available | Positive | 2792734 - 2794302 | 60080.8 |
| hypothetical protein | H9N25_11475 | Not Available | Positive | 2794333 - 2795742 | 53033.8 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsab | H9N25_11480 | Q87RD1 | Negative | 2795754 - 2796443 | 25071.1 |
| membrane protein insertion efficiency factor yidd | H9N25_11485 | A9M153 | Negative | 2796662 - 2796892 | 8589.75 |
| doxx family membrane protein | H9N25_11490 | B2RHI3 | Negative | 2796876 - 2797273 | 15432.2 |
| 50s ribosomal protein l34 | H9N25_11495 | A6KXS6 | Negative | 2797341 - 2797499 | 6263.67 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

