Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | H9N25_01105 | T2KNB8 | Positive | 262174 - 263502 | 50023.4 |
| vcbs repeat-containing protein | H9N25_01110 | Not Available | Positive | 263637 - 265169 | 57390.3 |
| hypothetical protein | H9N25_01115 | P0DW93 | Positive | 265326 - 267386 | 74080.4 |
| helix-turn-helix transcriptional regulator | H9N25_01120 | Q9Z9W1 | Negative | 267616 - 267972 | 13902.2 |
| hypothetical protein | H9N25_01125 | Not Available | Positive | 268106 - 268255 | 5264.4 |
| isochorismatase family protein | H9N25_01130 | Q54RC7 | Positive | 268320 - 268889 | 20305.9 |
| rna polymerase sigma-70 factor | H9N25_01135 | A1TEV0 | Positive | 269183 - 269761 | 22573.7 |
| fecr family protein | H9N25_01140 | Not Available | Positive | 269862 - 271037 | 44026.9 |
| tonb-dependent receptor | H9N25_01145 | T2KM18 | Positive | 271254 - 274511 | 119022.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_01150 | T2KN63 | Positive | 274533 - 276176 | 61867.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

