Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family membrane protein | H9N25_11400 | P24171 | Negative | 2778751 - 2780768 | 76554.8 |
| duf2892 domain-containing protein | H9N25_11405 | Not Available | Negative | 2780896 - 2781435 | 20598.9 |
| thioredoxin family protein | H9N25_11410 | Not Available | Positive | 2781551 - 2782069 | 19232.8 |
| uracil-dna glycosylase | H9N25_11415 | C1DQR0 | Positive | 2782240 - 2782920 | 25260.0 |
| alpha/beta hydrolase | H9N25_11420 | Not Available | Positive | 2782920 - 2783567 | 24038.6 |
| gxxexxy protein | H9N25_11425 | Not Available | Positive | 2783633 - 2784046 | 15757.7 |
| lrp/asnc family transcriptional regulator | H9N25_11430 | O07920 | Negative | 2784166 - 2784636 | 18040.3 |
| metal-dependent transcriptional regulator | H9N25_11435 | Q9CCB5 | Positive | 2784764 - 2785426 | 24912.0 |
| doxx family membrane protein | H9N25_11440 | Q89K67 | Positive | 2785413 - 2787277 | 67319.0 |
| redoxin domain-containing protein | H9N25_11445 | A0RBT0 | Negative | 2787362 - 2787841 | 18441.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

