Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iscs subfamily cysteine desulfurase | H9N25_11350 | B4UCP2 | Positive | 2769481 - 2770692 | 44075.0 |
| fe-s cluster assembly scaffold iscu | H9N25_11355 | Q9ZD61 | Positive | 2770805 - 2771218 | 14846.7 |
| iron-sulfur cluster assembly accessory protein | H9N25_11360 | A1WVE3 | Positive | 2771328 - 2771654 | 11887.9 |
| doxx family membrane protein | H9N25_11365 | P44446 | Positive | 2771767 - 2773682 | 70845.1 |
| doxx family membrane protein | H9N25_11370 | Not Available | Negative | 2773756 - 2774444 | 25451.2 |
| mgmt family protein | H9N25_11375 | A6B4U8 | Positive | 2774681 - 2775007 | 12019.6 |
| lysine--trna ligase | H9N25_11380 | Q5L9E5 | Positive | 2775287 - 2776996 | 64649.8 |
| hypothetical protein | H9N25_11385 | Not Available | Positive | 2777134 - 2777346 | 8276.78 |
| pyridoxamine 5'-phosphate oxidase family protein | H9N25_11390 | P80238 | Negative | 2777426 - 2777980 | 20371.9 |
| duf1905 domain-containing protein | H9N25_11395 | Not Available | Positive | 2778154 - 2778651 | 18880.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

