Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan synthetase | H9N25_11300 | A4J2B2 | Negative | 2762215 - 2763567 | 50438.4 |
| 50s ribosomal protein l11 methyltransferase | H9N25_11305 | A6L2N4 | Negative | 2763657 - 2764496 | 31636.2 |
| triose-phosphate isomerase | H9N25_11310 | Q11PZ7 | Negative | 2764497 - 2765258 | 27476.5 |
| rdd family protein | H9N25_11315 | Not Available | Negative | 2765276 - 2765728 | 17053.8 |
| doxx family membrane protein | H9N25_11320 | Q58501 | Negative | 2765731 - 2766896 | 42710.6 |
| type b 50s ribosomal protein l31 | H9N25_11325 | A5EVX0 | Negative | 2766969 - 2767217 | 9711.64 |
| hypothetical protein | H9N25_11330 | Not Available | Positive | 2767505 - 2767672 | 6261.74 |
| hypothetical protein | H9N25_11335 | Not Available | Positive | 2767681 - 2768379 | 26450.1 |
| hypothetical protein | H9N25_11340 | Not Available | Negative | 2768376 - 2768660 | 10812.8 |
| methylmalonyl-coa epimerase | H9N25_11345 | O58010 | Negative | 2768956 - 2769363 | 15219.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

