Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferritin-like domain-containing protein | H9N25_11250 | Not Available | Negative | 2752233 - 2753123 | 31362.4 |
| ferritin-like domain-containing protein | H9N25_11255 | Not Available | Negative | 2753143 - 2753871 | 25751.5 |
| response regulator transcription factor | H9N25_11260 | Q81JL3 | Positive | 2753996 - 2754781 | 29690.6 |
| histidine kinase | H9N25_11265 | P94586 | Positive | 2754771 - 2757776 | 114986.0 |
| smc-scp complex subunit scpb | H9N25_11270 | Q894L3 | Positive | 2758028 - 2758594 | 21547.6 |
| hypothetical protein | H9N25_11275 | Not Available | Positive | 2758681 - 2758872 | 7380.99 |
| gnat family n-acetyltransferase | H9N25_11280 | Q46840 | Positive | 2758944 - 2760062 | 43235.9 |
| eama family transporter | H9N25_11285 | P0AA72 | Negative | 2760292 - 2761188 | 32582.9 |
| lrp/asnc family transcriptional regulator | H9N25_11290 | P0ACJ2 | Negative | 2761227 - 2761706 | 17586.5 |
| helix-turn-helix transcriptional regulator | H9N25_11295 | P15017 | Negative | 2761826 - 2762146 | 11741.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

