Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| imp dehydrogenase | H9N25_11200 | Q9KGN8 | Negative | 2739699 - 2741168 | 52341.7 |
| sterol desaturase family protein | H9N25_11205 | Q6ZNB7 | Positive | 2741398 - 2742405 | 39190.3 |
| duf3857 domain-containing protein | H9N25_11210 | Not Available | Positive | 2742547 - 2744550 | 76578.2 |
| duf3857 domain-containing protein | H9N25_11215 | Not Available | Positive | 2744550 - 2746445 | 71489.2 |
| pyrimidine/purine nucleoside phosphorylase | H9N25_11220 | Q4K8Z0 | Positive | 2746454 - 2746735 | 10229.0 |
| insulinase family protein | H9N25_11225 | Q04805 | Negative | 2746858 - 2748129 | 47916.0 |
| insulinase family protein | H9N25_11230 | O25656 | Negative | 2748122 - 2749366 | 47229.0 |
| hypothetical protein | H9N25_11235 | Not Available | Positive | 2749529 - 2750158 | 23877.8 |
| hypothetical protein | H9N25_11240 | Not Available | Positive | 2750160 - 2750780 | 22277.6 |
| cofh family radical sam protein | H9N25_11245 | Q9K864 | Positive | 2750845 - 2751969 | 42115.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

