Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| family 20 glycosylhydrolase | H9N25_11150 | P49008 | Negative | 2726341 - 2728251 | 70520.7 |
| thioredoxin-disulfide reductase | H9N25_11155 | Q9KSS4 | Negative | 2729462 - 2730418 | 34100.5 |
| dipeptidase | H9N25_11160 | D4DEJ7 | Negative | 2730593 - 2731753 | 42735.4 |
| acyl-coa carboxylase subunit beta | H9N25_11165 | I6YDK7 | Negative | 2731896 - 2733524 | 59183.4 |
| duf2721 domain-containing protein | H9N25_11170 | Not Available | Positive | 2733732 - 2734175 | 16936.1 |
| duf1801 domain-containing protein | H9N25_11175 | Not Available | Positive | 2734177 - 2734638 | 17668.5 |
| hypothetical protein | H9N25_11180 | Not Available | Negative | 2734635 - 2735174 | 20735.8 |
| maoc family dehydratase | H9N25_11185 | Q7U2S5 | Negative | 2735237 - 2735698 | 17563.2 |
| tigr00730 family rossman fold protein | H9N25_11190 | P48636 | Negative | 2735804 - 2736397 | 21917.7 |
| doxx family membrane protein | H9N25_11195 | Not Available | Negative | 2736784 - 2739361 | 95457.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

